Comprehensive suite for rule-based learning

All Algorithms implemented in Python

Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

Jaeger is a quick and precise tool for detecting phages in sequence assemblies.

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

📚 Freely available programming books

Genomic language model predicts protein co-regulation and function

MMseqs2: ultra fast and sensitive search and clustering suite

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Phage-Host Interaction Search Tool

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

Unix, R and python tools for genomics and data science

Applied Computational Genomics Course at UU: Spring 2020