SEER, reimplemented in python 🐍🔮

Rapid Profiling and Deconvolution Tool for Metagenomes

colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

A general metagenomics data mining system focus on robust microbiome research

Rapid Profiling and Deconvolution Tool for Metagenomes

Gapless provides combined scaffolding, gap-closing and assembly correction with long reads

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

Weighted quality evaluation of assembled genomes

All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")

Simple Bioinformatic Tools

Useful bash one-liners for bioinformatics.

ATLAS - Three commands to start analyzing your metagenome data

A user-friendly workflow for phylogenomics

Streamlining phylogenomic data gathering, processing and visualization