Update README.md

asreview · J535D165 · Apr 24, 2023 · Mar 22, 2023 · Mar 22, 2023 · Mar 22, 2023
commit 8033a6c0a7538a823ac23ab361cef53c0b086e3b
diff --git a/README.md b/README.md
@@ -117,61 +117,32 @@ oa_status
 oa_url
 ```
 
+## Benchmark
 
-### Integration with ASReview Makita
+Work in progress. 
 
-First install both pyodss and makita with
-```sh
-pip install pyodss asreview-makita
-```
-
-Now create a new folder and run the following code:
-
-Linux/MacOS:
-
-```sh
-pyodss get -o data
-asreview makita basic
-sh run.sh
-```
-
-Windows:
-
-```bat
-pyodss get -o data
-asreview makita basic - run.bat
-run.bat
-```
-
-
-# Data pre-processing
-
-The full text of each article is pre-processed using natural language processing techniques. This includes tasks such as sentence segmentation, tokenization, part-of-speech tagging, and named entity recognition. The pre-processing step is designed to extract meaningful features from the text that can be used to train machine learning algorithms. The resulting pre-processed dataset is then split into training and testing sets, with a predefined ratio.
-
-
-
-# Data Format
+## Attribution
 
-The dataset is provided in a standardized format that includes the following fields:
+We would like to thank the following authors for openly sharing the data correponding their systematic review:
 
-Title: The title of the article.
-Abstract: The abstract of the article.
-Full Text: The full text of the article, pre-processed using natural language processing techniques.
-Inclusion Status: A binary label indicating whether the article was included or excluded in the systematic review.
-Reason for Exclusion: If the article was excluded, a brief explanation of the reason for exclusion.
-The dataset is provided in both CSV and JSON formats.
+[Christian Appenzeller-Herzog](https://orcid.org/0000-0001-7430-294X), [Tim Mathes](https://orcid.org/0000-0002-5304-1717), Marlies L.S. Heeres, [Karl Heinz Weiss](https://orcid.org/0000-0002-6336-9935), [Roderick H. J. Houwen](https://orcid.org/0000-0001-6124-7937), [Hannah Ewald](https://orcid.org/0000-0002-5081-1093), [Alexandra Bannach-Brown](https://orcid.org/0000-0002-3161-1395), [Piotr Przybyła](https://orcid.org/0000-0001-9043-6817), James D. Thomas, [Andrew S.C. Rice](https://orcid.org/0000-0001-9533-5636), [Sophia Ananiadou](https://orcid.org/0000-0002-4097-9191), [Jing Liao](https://orcid.org/0000-0001-7014-5377), [Malcolm R. Macleod](https://orcid.org/0000-0001-9187-9839), [Daniel Bos](https://orcid.org/0000-0001-8979-2603), [Frank J. Wolters](https://orcid.org/0000-0003-2226-4050), [Sirwan K.L. Darweesh](https://orcid.org/0000-0002-4361-4593), [Meike W. Vernooij](https://orcid.org/0000-0003-4658-2176), Frank de Wolf, [M. Arfan Ikram](https://orcid.org/0000-0003-0173-9571), [Albert Hofman](https://orcid.org/0000-0002-9865-121X), [Roger Chou](https://orcid.org/0000-0001-9889-8610), Elizabeth A. Clark, Mark Helfand, [Roger Chou](https://orcid.org/0000-0001-9889-8610), Kim Peterson, Mark Helfand, [Anouk A. M. T. Donners](https://orcid.org/0000-0002-8147-013X), Carin M. A. Rademaker, Lisanne A. H. Bevers, [Alwin D. R. Huitema](https://orcid.org/0000-0003-1939-4639), [Roger E. G. Schutgens](https://orcid.org/0000-0002-2762-6033), [Antoine C. G. Egberts](https://orcid.org/0000-0003-1758-7779), [Krista Fischer](https://orcid.org/0000-0001-7126-6613), [Trevor J. Hall](https://orcid.org/0000-0002-0427-6325), [Sarah Beecham](https://orcid.org/0000-0003-1584-5447), David Bowes, David Gray, [Serena J. Counsell](https://orcid.org/0000-0002-8033-5673), [Cathalijn H. C. Leenaars](https://orcid.org/0000-0002-8212-7632), Wilhelmus Drinkenburg, Christ Nolten, Maurice Dematteis, Ruud N. J. M. A. Joosten, Matthijs G. P. Feenstra, [Rob B. M. de Vries](https://orcid.org/0000-0002-0000-8796), [Rosanne W. Meijboom](https://orcid.org/0000-0002-7370-0695), [Helga Gardarsdottir](https://orcid.org/0000-0001-5623-9684), [Antoine C. G. Egberts](https://orcid.org/0000-0003-1758-7779), [Thijs J. Giezen](https://orcid.org/0000-0002-4087-033X), Heidi Nelson, Linda Humphrey, Peggy Nygren, Steven M. Teutsch, Janet D. Allan, Dimitrije Radjenović, [Marjan Hericko](https://orcid.org/0000-0002-1094-0085), [Richard Torkar](https://orcid.org/0000-0002-0118-8143), Aleš Živkovič, [Sanne C. Smid](https://orcid.org/0000-0001-6451-202X), [Daniel McNeish](https://orcid.org/0000-0003-1643-9408), [Milica Miočević](https://orcid.org/0000-0001-8487-3666), [Rens van de Schoot](https://orcid.org/0000-0001-7736-2091), [Eline S van der Valk](https://orcid.org/0000-0001-5134-5453), [Ozair Abawi](https://orcid.org/0000-0002-1343-6562), Mostafa Mohseni, Amir Abdelmoumen, Vincent L. Wester, [Bibian van der Voorn](https://orcid.org/0000-0003-1299-0067), [Anand Krishnan V. Iyer](https://orcid.org/0000-0002-2090-5590), [Erica L T van den Akker](https://orcid.org/0000-0001-5352-9328), [Sanne E. Hoeks](https://orcid.org/0000-0003-4022-9574), Sjoerd A.A. van den Berg, [Yolanda B. de Rijke](https://orcid.org/0000-0001-7759-4968), [Tobias Stalder](https://orcid.org/0000-0001-7558-1274), [Elisabeth F.C. van Rossum](https://orcid.org/0000-0003-0120-4913), [Rens van de Schoot](https://orcid.org/0000-0001-7736-2091), [Marit Sijbrandij](https://orcid.org/0000-0001-5430-9810), [Sonja D. Winter](https://orcid.org/0000-0002-2203-002X), [Sarah Depaoli](https://orcid.org/0000-0002-1277-0462), [Jeroen K. Vermunt](https://orcid.org/0000-0001-9053-9330), Eva A.M. van Dis, [Suzanne C. van Veen](https://orcid.org/0000-0002-5659-2557), Muriel A. Hagenaars, [Neeltje M. Batelaan](https://orcid.org/0000-0001-6444-3781), [Claudi L H Bockting](https://orcid.org/0000-0002-9220-9244), [Rinske M van den Heuvel](https://orcid.org/0000-0002-3835-4686), [Pim Cuijpers](https://orcid.org/0000-0001-5497-2743), Iris M. Engelhard, [Frank J. Wolters](https://orcid.org/0000-0003-2226-4050), Reffat A. Segufa, [Sirwan K.L. Darweesh](https://orcid.org/0000-0002-4361-4593), [Daniel Bos](https://orcid.org/0000-0001-8979-2603), [M. Arfan Ikram](https://orcid.org/0000-0003-0173-9571), [Behnam Sabayan](https://orcid.org/0000-0002-1176-9152), [Albert Hofman](https://orcid.org/0000-0002-9865-121X), [Sanaz Sedaghat](https://orcid.org/0000-0002-3244-7726)
 
-# Dataset Size
+For more credits, run `pyodss attribution`.
 
-The dataset contains a total of X articles, of which Y were included in the systematic review and Z were excluded. The training set contains a subset of X articles, with a predefined ratio, while the testing set contains the remaining articles.
+## Citing SYNERGY dataset
 
-The ODSS dataset is a linked dataset that consists of Study Selection in Systematic Reviews. The dataset consists of XXX fully labeled datasets. For all these datasets, an OpenAlex record is available.
+If you use SYNERGY in a scientific publication, we would appreciate references to:
 
-## Attribution
+Biblatex entry:
 
-We would like to thank the following authors for openly sharing the data correponding their systematic review:
+@online{xxx,
+ author = {xxx},
+ title = {xxx},
+ date = {xxx},
+ year = {2023},
+}
 
-[Christian Appenzeller-Herzog](https://orcid.org/0000-0001-7430-294X), [Tim Mathes](https://orcid.org/0000-0002-5304-1717), Marlies L.S. Heeres, [Karl Heinz Weiss](https://orcid.org/0000-0002-6336-9935), [Roderick H. J. Houwen](https://orcid.org/0000-0001-6124-7937), [Hannah Ewald](https://orcid.org/0000-0002-5081-1093), [Alexandra Bannach-Brown](https://orcid.org/0000-0002-3161-1395), [Piotr Przybyła](https://orcid.org/0000-0001-9043-6817), James D. Thomas, [Andrew S.C. Rice](https://orcid.org/0000-0001-9533-5636), [Sophia Ananiadou](https://orcid.org/0000-0002-4097-9191), [Jing Liao](https://orcid.org/0000-0001-7014-5377), [Malcolm R. Macleod](https://orcid.org/0000-0001-9187-9839), [Daniel Bos](https://orcid.org/0000-0001-8979-2603), [Frank J. Wolters](https://orcid.org/0000-0003-2226-4050), [Sirwan K.L. Darweesh](https://orcid.org/0000-0002-4361-4593), [Meike W. Vernooij](https://orcid.org/0000-0003-4658-2176), Frank de Wolf, [M. Arfan Ikram](https://orcid.org/0000-0003-0173-9571), [Albert Hofman](https://orcid.org/0000-0002-9865-121X), [Roger Chou](https://orcid.org/0000-0001-9889-8610), Elizabeth A. Clark, Mark Helfand, [Roger Chou](https://orcid.org/0000-0001-9889-8610), Kim Peterson, Mark Helfand, [Anouk A. M. T. Donners](https://orcid.org/0000-0002-8147-013X), Carin M. A. Rademaker, Lisanne A. H. Bevers, [Alwin D. R. Huitema](https://orcid.org/0000-0003-1939-4639), [Roger E. G. Schutgens](https://orcid.org/0000-0002-2762-6033), [Antoine C. G. Egberts](https://orcid.org/0000-0003-1758-7779), [Krista Fischer](https://orcid.org/0000-0001-7126-6613), [Trevor J. Hall](https://orcid.org/0000-0002-0427-6325), [Sarah Beecham](https://orcid.org/0000-0003-1584-5447), David Bowes, David Gray, [Serena J. Counsell](https://orcid.org/0000-0002-8033-5673), [Cathalijn H. C. Leenaars](https://orcid.org/0000-0002-8212-7632), Wilhelmus Drinkenburg, Christ Nolten, Maurice Dematteis, Ruud N. J. M. A. Joosten, Matthijs G. P. Feenstra, [Rob B. M. de Vries](https://orcid.org/0000-0002-0000-8796), [Rosanne W. Meijboom](https://orcid.org/0000-0002-7370-0695), [Helga Gardarsdottir](https://orcid.org/0000-0001-5623-9684), [Antoine C. G. Egberts](https://orcid.org/0000-0003-1758-7779), [Thijs J. Giezen](https://orcid.org/0000-0002-4087-033X), Heidi Nelson, Linda Humphrey, Peggy Nygren, Steven M. Teutsch, Janet D. Allan, Dimitrije Radjenović, [Marjan Hericko](https://orcid.org/0000-0002-1094-0085), [Richard Torkar](https://orcid.org/0000-0002-0118-8143), Aleš Živkovič, [Sanne C. Smid](https://orcid.org/0000-0001-6451-202X), [Daniel McNeish](https://orcid.org/0000-0003-1643-9408), [Milica Miočević](https://orcid.org/0000-0001-8487-3666), [Rens van de Schoot](https://orcid.org/0000-0001-7736-2091), [Eline S van der Valk](https://orcid.org/0000-0001-5134-5453), [Ozair Abawi](https://orcid.org/0000-0002-1343-6562), Mostafa Mohseni, Amir Abdelmoumen, Vincent L. Wester, [Bibian van der Voorn](https://orcid.org/0000-0003-1299-0067), [Anand Krishnan V. Iyer](https://orcid.org/0000-0002-2090-5590), [Erica L T van den Akker](https://orcid.org/0000-0001-5352-9328), [Sanne E. Hoeks](https://orcid.org/0000-0003-4022-9574), Sjoerd A.A. van den Berg, [Yolanda B. de Rijke](https://orcid.org/0000-0001-7759-4968), [Tobias Stalder](https://orcid.org/0000-0001-7558-1274), [Elisabeth F.C. van Rossum](https://orcid.org/0000-0003-0120-4913), [Rens van de Schoot](https://orcid.org/0000-0001-7736-2091), [Marit Sijbrandij](https://orcid.org/0000-0001-5430-9810), [Sonja D. Winter](https://orcid.org/0000-0002-2203-002X), [Sarah Depaoli](https://orcid.org/0000-0002-1277-0462), [Jeroen K. Vermunt](https://orcid.org/0000-0001-9053-9330), Eva A.M. van Dis, [Suzanne C. van Veen](https://orcid.org/0000-0002-5659-2557), Muriel A. Hagenaars, [Neeltje M. Batelaan](https://orcid.org/0000-0001-6444-3781), [Claudi L H Bockting](https://orcid.org/0000-0002-9220-9244), [Rinske M van den Heuvel](https://orcid.org/0000-0002-3835-4686), [Pim Cuijpers](https://orcid.org/0000-0001-5497-2743), Iris M. Engelhard, [Frank J. Wolters](https://orcid.org/0000-0003-2226-4050), Reffat A. Segufa, [Sirwan K.L. Darweesh](https://orcid.org/0000-0002-4361-4593), [Daniel Bos](https://orcid.org/0000-0001-8979-2603), [M. Arfan Ikram](https://orcid.org/0000-0003-0173-9571), [Behnam Sabayan](https://orcid.org/0000-0002-1176-9152), [Albert Hofman](https://orcid.org/0000-0002-9865-121X), [Sanaz Sedaghat](https://orcid.org/0000-0002-3244-7726)
+## Contact
 
-For more credits, run `pyodss credits`.
+Reach out on the [Discussion forum](https://github.com/asreview/systematic-review-datasets/discussions).