Simulation of exact paths for the Wright-Fisher diffusion and diffusion-bridge

Population-scale genomics

wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

Markov chain Monte Carlo with Metropolis-Hasting algorithm

A library for probabilistic programming in Haskell.

Update immutable data

Laplace transformed coalescence time distributions

Core utilities for PopGen.jl, including the PopData type and file IO

Exploratory analysis of Bayesian models with Julia

Mongrail is a program for identifying hybrids and back crosses using genomic data

Personal Wiki for Vim

DILS : Demographic Inferences with Linked Selection

Julia solvers for systems of nonlinear equations and mixed complementarity problems

a challenge for Haskell beginners

A fast, high quality library for computing with statistics in Haskell.

implementation of algo for plotting non-layered tidy phylogenetic trees (van der Ploeg, 2014)

📜 Haskell course info, plan, video lectures, slides

Run and compare algorithms for phylogenetic reconciliation and super-reconciliation

An implementation of PSIS algorithms in Julia.

Update deeply nested immutable structs.

Bayesian analysis of genomic sequence data under the multispecies coalescent model

A flat theme with transparent elements. Based on the Arc theme: https://github.com/jnsh/arc-theme

Replace Unicode symbols by equivalent Latex commands

Remy, an online&offline manager for the reMarkable tablet

Hybrid-coal is used to compute gene tree probabilities given species network under coalescent process. We use a new representation of the species network likelihood that expresses the probability d…

Species tree estimation from multi-copy gene trees

Building dynamical systems compositionally