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Machine learning from scratch

Jupyter Notebook 1,059 54 Updated Nov 1, 2024

Curated list of project-based tutorials

203,974 26,635 Updated Aug 15, 2024

A scalable bacterial genome assembly, annotation and analysis pipeline

Groovy 71 19 Updated Dec 5, 2023

A collection of awesome study resources for learners of English.

2,245 252 Updated Oct 6, 2024

Pipeline components for real-time phylodynamic analysis

Python 268 128 Updated Nov 13, 2024

Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data

32 25 Updated Oct 25, 2013

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

6,198 626 Updated Oct 14, 2024

Infectious Disease Sequencing Platform

TypeScript 79 24 Updated Oct 31, 2024

Portable WDL workflows for IDseq production pipelines

Python 31 12 Updated Jan 19, 2022

Unix, R and python tools for genomics and data science

Shell 1,177 351 Updated Jul 22, 2024

Bioinformatics code libraries and scripts

Python 501 248 Updated Oct 22, 2024

R package that makes basic data exploration radically simple (interactive data exploration, reproducible data science)

R 212 23 Updated Nov 12, 2024

A curated list of awesome Bioinformatics libraries and software.

3,178 617 Updated Apr 2, 2024

A DSL for data-driven computational pipelines

Groovy 2,759 629 Updated Nov 13, 2024

Nextflow training material

Nextflow 128 120 Updated Nov 13, 2024

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

45 5 Updated Jul 12, 2022

⚡ ♒ Rapid prokaryotic genome annotation

Perl 839 226 Updated Apr 10, 2024

An analysis and visualization platform for 'omics data

Python 441 146 Updated Nov 13, 2024

Rapid large-scale prokaryote pan genome analysis

Perl 323 189 Updated Apr 21, 2022

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

Python 92 20 Updated Nov 7, 2024

Conda recipes for the bioconda channel.

Shell 1,646 3,276 Updated Nov 13, 2024

A grammar of graphics for comparative genomics

R 596 64 Updated Aug 30, 2024

a python package for automated generation of phylogenetic trees from genbank files

Python 16 1 Updated Nov 7, 2024

A flexible pipeline for complete analysis of bacterial genomes

Nextflow 413 70 Updated Oct 31, 2024