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# This program is based on research paper [SA-SSR](www.ncbi.nlm.nih.gov/pubmed/27170037) # Right now it is finding only Exact tandem repeats of any length #Test data Dna Sequence: >gi|568815580|ref|NC_000018.10| Homo sapiens chromosome 18, GRCh38.p7 Primary Assembly # Src files TandemRepeatFinder.java TandemRepeatFinderSeq.java Compile: javac TandemRepeatFinder.java javac TandemRepeatFinderSeq.java Run: javac TandemRepeatFinder javac TandemRepeatFinderSeq # Compare Output and running time $ time java TandemRepeatFinder > output_par.txt $ time java TandemRepeatFinderSeq > output_seq.txt System.out.println("Usage: java TandemRepeatFinderSeq <fasta_file> <output_type>" + "\n1.PrintUnit, 2.PrintSequence, 3.PrintFrequency, 4.PrintUnitSequence, 5.PrintRange\n\t f time java TandemRepeatFinderSeq data.fasta <options>
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