Whole Exome Sequencing Project, requires preliminary quality check analysis. Multiqc.Snakefile is a collection of tools put together using Snakemake.
Tools include
- FastQC
- QualiMap
- Samtools Flagstats
- GATK Select Variants
- GATK Variant Eval
- SNPeff
- BCFtools
- MultiQC
** If using this Snakemake, Please acknowledge (NIH/NIAID)**