A pipeline using a Multi-Modal 7T MRI template to segment Deep Grey Nuclei, and parcellate Substantia Nigra, STh, Red Nuclei (on MP2rage T1map, Quantitative Susceptibility Mapping and Apparent Transverse Relaxation Rate R2s maps).

Registration and Warping 7TAMI_MM atlases (template space) to qT1/QSM/R2s maps / (subject space):

./run_7TAMI_MM.sh

Stephan Grimaldi, Arnaud Le Troter, Mohamed Mounir El Mendili, Hugo Dary, Jean-Philippe Azulay, Wafaa Zaaraoui, Jean-Philippe Ranjeva, Alexandre Eusebio, Ludovic de Rochefort, Maxime Guye, Energetic dysfunction and iron overload in early Parkinson’s disease: two distinct mechanisms?, Parkinsonism & Related Disorders, 2024, 106996, ISSN 1353-8020, https://doi.org/10.1016/j.parkreldis.2024.106996.

This work was supported by ANR (ANR-15-CE19-0019-01, ‘NEUROintraSOD-7T’) and AMIDEX (AMIDEX-EI-17-29-170228-09.43-Imetionic-7, 7TEAMS Chair). Also, this work was performed by a laboratory member of France Life Imaging network (grant ANR-11-INBS-0006).