[FLINK-10516] [yarn] fix YarnApplicationMasterRunner fail to initiali…

[yanyan300300]

What is the purpose of the change

This pull request makes YarnApplicationMasterRunner explicitly initialize FileSystem with Flink Configuration, so that the HadoopFileSystem can take in the custom HDFS configuration (e.g. core-site.xml under fs.hdfs.hadoopconf).

Does this pull request potentially affect one of the following parts:

• Dependencies (does it add or upgrade a dependency): no
• The public API, i.e., is any changed class annotated with @Public(Evolving): no
• The serializers: no
• The runtime per-record code paths (performance sensitive): no
• Anything that affects deployment or recovery: JobManager (and its components), Checkpointing, Yarn/Mesos, ZooKeeper: yes
• The S3 file system connector: no

Documentation

• Does this pull request introduce a new feature? no
• If yes, how is the feature documented? not applicable

[suez1224]

LGTM. Will merge after the tests run through.