My portable development environment

Developmental Version of R package CliquePercolation

GitHub Actions for the R community

Parallel Mutual Information estimation for Gene Network reconstruction

Hackers' Guide to Language Models

A novel precision medicine workflow, the integrated single nucleotide polymorphism network platform (iSNP), designed to determine the mechanisms by which SNPs affect cellular regulatory networks, a…

UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data

Get, parse, and extract information from the SRA metadata files

A tool to find sequencing data and metadata from public databases.

RNAseq analysis notes from Ming Tang

A repo for implementation of Graph features autoencoder for expression values prediction and imputation

MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

Data Communication - BCB 724

This is a R package that intends to perform all the features possible by tensor decomposition based unsupervised feature extraction

An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

🔧 R package: startup - Friendly R Startup Configuration

Metabolome Annotation Workflow

A comment system powered by GitHub Discussions. 💬 💎

GPT Meet Zotero.

Computational Metabolomics

Docker to run RSEM for transcript quantification

Example Nextflow pipelines and programming techniques

Minimal tutorials for PyTorch

This repo includes ChatGPT prompt curation to use ChatGPT better.

Data toolkits for processing NMR, MALDI MSI, MALDI single cell, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.

The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines