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Format error for filterBlastInfo.sh #6
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Hi,
When I run filterBlastInfo.sh with paired end option, I found the following error.
Although the error said "Paired end should be numbered as xxx/1 and xxx/2", the name of blast table file was like "XXX1.table" or "XXXX1_vs_bacteria.table". What should I do to address this error?
filterBlastInfo.sh -i /media/.../decontaminer/RESULTS/BACTERIA
--------------output--------------
-- FILTERING BLAST RESULTS --
INFO: paired/single end flag -s not specified. PAIRED END assumed (default option).
INFO: organism type flag -V not specified. O(thers) assumed (default option).
INFO: processing PAIRED END data.
INFO: processing NON virus alignments
Processing file /media/.../decontaminer/RESULTS/BACTERIA/0_unmapped.1_vs_bacteria.table
Using L=read length G =0 M=0
Processing...
Format error on paired end names! Paired end should be numbered as xxx/1 and xxx/2 where xxx is the name of the query
--------------↑output--------------
Before filterBlastInfo.sh, I performed decontaMiner.sh using the paried end fastq files (0_unmapped.1.fastq, 0_unmapped.2.fastq). And in the directly RESULTS/BACTERIA, the files like 0_unmapped.1_vs_bacteria were generated.
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