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Format error on paired end names! #1
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Please print the header of your fastq file... and check. Decontaminer expects the following format: @A00121:137:HTLF3DSXX:3:1110:3097:35571/1 If you have other format (such as mentioned in example below) of PR reads, you can rename/change from this to the required one using simple linux command mention at the end. @A00121:137:HTLF3DSXX:3:1110:3097:35571 0:N: 00 for this case on Linux terminal sed 's/ 0:N:0:https://1/g' inputfile > outputfile Should work... |
Hi, I'm trying to run deconaMiner. The data I'm using is paired-end and in fastq format but as the manual says I merged the two fastqs. The problem is that when I try to run filterBlastInfo.sh I get this error
Format error on paired end names! Paired end should be numbered as xxx/1 and xxx/2 where xxx is the name of the query
I don't know if I'm merging the fastqs wrong or something, could you help me please?
Thanks!
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