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Achievement: Pair ExtraordinaireAchievement: Pull SharkAchievement: StarstruckAchievement: Arctic Code Vault Contributor
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almaan/README.md

Hello World 👋

Something brief about me

🐥 in 🇸🇪 | 🏠 in 🇺🇸 | ❤️ with 🏃

  • Who: I'm Alma Andersson, a Sr. AI Scientist at Genentech, working in the AI/ML Department as a part of the spatially focused team. I completed my PhD in 2019 after 2.5 amazing years in the Lundeberg lab focusing on computational method development for analysis of spatial-omics data.
  • Work: Currently, a lot of my work focuses on designing and implementing computational models designed to capture the fundamental elements of tissue biology. This results in a mixture of probabilistic, dynamic, generative, and standard ML models. The main data modalities is spatial data and images.
  • Interests:
    • Technical: generative learning, uncertainty estimates, foundational models, dynamical systems, programming
    • Non-technical: running (my big passion), sports science, mountain climbing/hiking, video editing, modern and ancient history

Where to find me

  • 🏠 I reside in the beautiful Bay Area. I'm always down for a f2f chat.
  • 🌐 Website: differentiable[dot]net
  • 📧 You can also reach out on email at alma.andersson[at]differentiable[dot]net
  • 🔥 I used to post frequently on twitter, but given the dumpster fire it's turned into, I'm not very active. However, my account is 👉 Twitter URL

Pinned Loading

  1. stereoscope stereoscope Public

    Spatial mapping of cell types by integration of transcriptomics data

    Python 85 26

  2. eggplant eggplant Public

    Jupyter Notebook 19 5

  3. sepal sepal Public

    sepal : Spatial Expression PAttern Locator

    Python 6 1

  4. her2st her2st Public

    Her2 Breast Cancer Project

    Jupyter Notebook 50 14

  5. ST-mLiver ST-mLiver Public

    Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver

    Jupyter Notebook 9 2

  6. space2h5ad space2h5ad Public

    Automatic conversion of spacerange output to h5ad format

    Python 3