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BioPipeline Creator - A user-friendly Java-based GUI for managing and customizing biological data pipelines.

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BioPipeline Creator - A user-friendly Java-based GUI for managing and customizing biological data pipelines

BioPipeline Creator, a user-friendly Java-based GUI that allows different software tools to be integrated into the repertoire while ensuring easy user interaction via an accessible graphical interface. Consisting of client and server software components, BioPipeline Creator provides an intuitive graphical interface that simplifies the use of various bioinformatics tools for users without advanced computer skills. It can run on less sophisticated devices or workstations, allowing users to keep their operating system without having to switch to another compatible system. The server is responsible for the processing tasks and can perform the analysis in the user's local or remote network structure. Compatible with the most important operating systems

Technology

Image Image Image Image Image

Quick Guide for the Impatient (Server and Client)

Server

  • System Update

    sudo apt update

    sudo apt upgrade

  • Docker installation

    curl -fsSL https://get.docker.com -o get-docker.sh

    sudo sh get-docker.sh

  • Add your user to the "docker" group

    sudo usermod -aG docker $USER

  • Create a Docker container

    docker create -it --name pp2oa -p 16002:16002 biodufpa/pp2oa

  • Start container

    docker start -i pp2oa

Client

  • Running client

    java -jar Client_PP2OA.jar

Video Tutorial

You can download the Video Tutorial

See User Guide for details

You can download the User Guide

Screenshots

AddTool CreateProject MainWindow

Cite this article

Maia Cordeiro, C., da Silva Moia, G., de Oliveira, M.S. et al. BioPipeline Creator—a user-friendly Java-based GUI for managing and customizing biological data pipelines. Sci Rep 14, 16572 (2024). https://doi.org/10.1038/s41598-024-67409-8

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