BioPipeline Creator - A user-friendly Java-based GUI for managing and customizing biological data pipelines
BioPipeline Creator, a user-friendly Java-based GUI that allows different software tools to be integrated into the repertoire while ensuring easy user interaction via an accessible graphical interface. Consisting of client and server software components, BioPipeline Creator provides an intuitive graphical interface that simplifies the use of various bioinformatics tools for users without advanced computer skills. It can run on less sophisticated devices or workstations, allowing users to keep their operating system without having to switch to another compatible system. The server is responsible for the processing tasks and can perform the analysis in the user's local or remote network structure. Compatible with the most important operating systems
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System Update
sudo apt update
sudo apt upgrade
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Docker installation
curl -fsSL https://get.docker.com -o get-docker.sh
sudo sh get-docker.sh
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Add your user to the "docker" group
sudo usermod -aG docker $USER
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Create a Docker container
docker create -it --name pp2oa -p 16002:16002 biodufpa/pp2oa
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Start container
docker start -i pp2oa
- Running client
java -jar Client_PP2OA.jar
You can download the Video Tutorial
You can download the User Guide
Maia Cordeiro, C., da Silva Moia, G., de Oliveira, M.S. et al. BioPipeline Creator—a user-friendly Java-based GUI for managing and customizing biological data pipelines. Sci Rep 14, 16572 (2024). https://doi.org/10.1038/s41598-024-67409-8