added query to get primaryAccession from proteinId

src/queries/proteinIdToProtein.js

@@ -0,0 +1,33 @@
+const queryGeneToProtein = proteinId => ({
+ name: 'Protein_Sequence',
+ title: 'Protein --> Sequence',
+ description:
+ 'for a specified protein or list proteins give the protein sequence and length.',
+ from: 'Protein',
+ select: ['primaryIdentifier', 'primaryAccession'],
+ where: [
+ {
+ path: 'Protein.id',
+ op: '=',
+ value: proteinId,
+ switched: 'LOCKED',
+ switchable: false
+ }
+ ]
+});
+
+// eslint-disable-next-line
+function queryData(geneId, serviceUrl, imjsClient = imjs) {
+ return new Promise((resolve, reject) => {
+ const service = new imjsClient.Service({ root: serviceUrl });
+ service
+ .records(queryGeneToProtein(geneId))
+ .then(data => {
+ if (data.length) resolve(data[0]);
+ else reject('No associated proteins found!');
+ })
+ .catch(reject);
+ });
+}
+
+module.exports = queryData;