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  1. molecularvolume molecularvolume Public

    Utilities for molecular volume calculation

    Python 10 3

  2. kde kde Public

    Python library for kernel density estimation, including interface for WESTPA data

    Python 8 3

  3. proteinAUnfoldWE proteinAUnfoldWE Public

    Example setup for a weighted ensemble simulation using WESTPA, that samples the unfolding of protein A. The progress coordinate is the RMSD of the hydrophobic core relative to the crystal structure.

    Shell

  4. misc_simulation_tools misc_simulation_tools Public

    Python 1 1

  5. weighted_ensemble_tools weighted_ensemble_tools Public

    Python 1

  6. kineticmodels kineticmodels Public

    Python