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61 Open 122 Closed
61 Open 122 Closed
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Issues list

Unrecognized value for mode flag. Running with default parameters
#187 opened Sep 11, 2024 by dupuquan
No FINAL* files created.
#186 opened Jul 28, 2024 by Yang-xia13
some question about parameters
#185 opened Jun 6, 2024 by oddguyeee
No result file is generated
#184 opened May 6, 2024 by zhangyuxin1012
:( Annotations span several contigs. Exiting!
#183 opened Apr 24, 2024 by ZKYthli
1
Enhancement Request: Handling Telomeric Segments During 3D-DNA Correction and Potential Strategies to Prevent Trimming
#182 opened Apr 16, 2024 by Hanjiangna
syntax error with run-assembly-visualizer.sh
#181 opened Mar 21, 2024 by MY0NEMA
ask forhelp ： error when run run-asm-pipeline.sh
#180 opened Feb 24, 2024 by Jiangjiangzhang6
5
error when run the run-asm-pipeline-post-review.sh, the final.fasta was too small
#179 opened Jan 22, 2024 by Jiangjiangzhang6
7
Not including fragment map and not geneated the final fasta file use the run-asm-pipeline-post-review
#178 opened Jan 20, 2024 by Jiangjiangzhang6
3
.Exception in thread "main" java.lang.OutOfMemoryError: Java heap space and GC overhead limit exceeded
#177 opened Jan 10, 2024 by zhangna123-ux
chromosome contains which contigs after run run-asm-pipeline-post-review.sh.
#176 opened Dec 19, 2023 by sumoii
Unknown error: ERROR [2023-11-15 12:16:26,414] [DatasetReaderV2.java:229] [main] Error reading dataset java.io.EOFException
#175 opened Nov 17, 2023 by SwenDiepstraten
Abnormal size of *.0.hic
#173 opened Sep 18, 2023 by linshengnan09
5
Hifi and ONT behave differently in 3D-DNA(same species)
#172 opened Jul 22, 2023 by anxuan-web
2
very fragmented draft genome
#171 opened Jun 26, 2023 by sqwwww
I have a hap_ctg.fa file with 4.5G, used juicer I got 52.31G merged_nodups_txt,then I used 3D-DNA run-asm-pipeline.sh, I only got 55.72M final.hic file
#169 opened Apr 12, 2023 by wyl1219
4
What is the difference between 0.hic, 0.assembly and rawchrom.hic, rawchrom.assembly?
#168 opened Apr 10, 2023 by XXH123a
error: java not available
#167 opened Mar 21, 2023 by dandanWang2019
5
No hic output
#163 opened Feb 7, 2023 by Donbbit
No FINAL* files created.
#159 opened Nov 1, 2022 by Jung19911124
9
3d-dna pipeline to scaffolding a hifiasm heterozygous assembly
#156 opened Oct 10, 2022 by ericgonzalezs
3
lift-input-annotations-to-asm-annotations.awk 2D annotation file
#155 opened Sep 20, 2022 by chun-he-316
lift-input-annotations-to-asm-annotations.awk: line 108: regular expression compile failed (syntax error ^* or ^+)
#154 opened Sep 14, 2022 by chun-he-316
overlong scaffold
#153 opened Sep 11, 2022 by wangyzh
ProTip! What’s not been updated in a month: updated:<2024-08-17.