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single-cell-pseudotime Public
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
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scikit-learn Public
Forked from scikit-learn/scikit-learnscikit-learn: machine learning in Python
Python Other UpdatedJun 1, 2024 -
Machine-learning-for-proteins Public
Forked from yangkky/Machine-learning-for-proteinsListing of papers about machine learning for proteins.
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folding_tools Public
Forked from biolists/folding_toolsA collection of *fold* tools
MIT License UpdatedMay 29, 2024 -
Awesome-Biomolecule-Language-Cross-Modeling Public
Forked from QizhiPei/Awesome-Biomolecule-Language-Cross-ModelingAwesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"
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rosetta Public
Forked from RosettaCommons/rosettaThe Rosetta Bio-macromolecule modeling package.
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awesome-self-driving-labs Public
Forked from AccelerationConsortium/awesome-self-driving-labsA curated list of self-driving laboratories that combine hardware automation and artificial intelligence to accelerate scientific discovery.
Creative Commons Zero v1.0 Universal UpdatedJan 5, 2024 -
proteomics-tutorial Public
Forked from jessegmeyerlab/proteomics-tutorial -
spras Public
Forked from Reed-CompBio/sprasSignaling Pathway Reconstruction Analysis Streamliner (SPRAS)
Python MIT License UpdatedAug 14, 2023 -
snakemake-demos Public
Forked from dpmerrell/snakemake-demosExample Snakefiles for various use cases
Python UpdatedJul 20, 2023 -
dmol-book Public
Forked from whitead/dmol-bookDeep learning for molecules and materials book
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sanbomics Public
Forked from mousepixels/sanbomicsbioinformatics plotting and tools
Python MIT License UpdatedApr 7, 2023 -
try-manubot Public
Forked from manubot/try-manubotA repository to practice contributing to a Manubot manuscript
HTML Other UpdatedFeb 25, 2023 -
covid19-review Public
Forked from greenelab/covid19-reviewA collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
HTML Other UpdatedJan 16, 2023 -
manubot Public
Forked from manubot/manubotThe manuscript bot for automated scholarly publishing (Python package)
Python Other UpdatedOct 7, 2022 -
htcondor Public
Forked from Snakemake-Profiles/htcondorSnakemake profile for HTCondor
Python MIT License UpdatedAug 12, 2022 -
chtc-website-source Public
Forked from CHTC/chtc-website-sourceSource markdown and contents of the CHTC website
HTML UpdatedJun 8, 2022 -
my-manuscript Public
Test manuscript from https://github.com/manubot/rootstock
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deep-review Public
Forked from greenelab/deep-reviewA collaboratively written review paper on deep learning, genomics, and precision medicine
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deep-rules Public
Forked from Benjamin-Lee/deep-rulesTen Simple Rules for Deep Learning in Biology
CSS Other UpdatedNov 29, 2021 -
templates-GPUs Public
Forked from CHTC/templates-GPUsTemplate job submissions using GPUs in CHTC
Python MIT License UpdatedNov 20, 2021 -
SCODE Public
Forked from hmatsu1226/SCODESCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
R UpdatedOct 11, 2021 -
ml4bio-workshop Public
Forked from carpentries-incubator/ml4bio-workshopMaterials for a workshop introducing machine learning to biologists
Jupyter Notebook Other UpdatedAug 16, 2021 -
OmicsIntegrator2 Public
Forked from fraenkel-lab/OmicsIntegrator2Prize-Collecting Steiner Forests for Interactomes
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedApr 2, 2021 -
hpc-python Public
Forked from hpc-carpentry/hpc-pythonHPC Python lesson materials
Python Other UpdatedMar 4, 2021 -
manubot-awesome-list Public
Proof of concept for creating awesome lists with Manubot
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compbio-edi Public
Forked from greenelab/compbio-ediCurated summary of efforts to promote equity, diversity, and inclusion in computational biology PhD programs and societies.
UpdatedAug 12, 2020 -
PathLinker Public
Forked from Murali-group/PathLinkerConnect the dots in networks.
Python GNU General Public License v3.0 UpdatedAug 12, 2020