Add TrajectoryNet manuscript

README.md

@@ -497,10 +497,12 @@ Manuscript: [CellCycleTRACER accounts for cell cycle and volume in mass cytometr
 
 ### TrajectoryNet
 
-Software: https://github.com/krishnaswamylab/TrajectoryNet
+Software: https://github.com/krishnaswamylab/TrajectoryNet and https://github.com/KrishnaswamyLab/Cell-Dynamics-Pipeline
 
 Manuscript: [TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics](https://arxiv.org/abs/2002.04461)
 
+Additional manuscript: [Learning transcriptional and regulatory dynamics driving cancer cell plasticity using neural ODE-based optimal transport](https://doi.org/10.1101/2023.03.28.534644)
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 ### redPATH
 
 Software: https://github.com/tinglab/redPATH
@@ -753,6 +755,11 @@ Manuscript: [A method for differential expression analysis and pseudo-temporal l
 
 
 
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 ## Related topics