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Dev #186

Merged
merged 7 commits into from
Jul 17, 2020
Merged

Dev #186

merged 7 commits into from
Jul 17, 2020

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cflerin
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@cflerin cflerin commented Jul 17, 2020

@cflerin
Add grn multiprocessing script to package CLI
529450f
@cflerin
Updated docs for mp script
90f9bc6
@cflerin
Add error message when regulons file is empty
08e2bbc 
- Resolves #133
@cflerin
Bugfix in TF-gene correlation calculation:
3205b9a 
- If there are genes present in the network adjacencies that are missing
from the expression matrix, the modules_from_adjacencies function will
fail with a pandas KeyError.
- Fixes #103 and  #149
@cflerin
cisTarget step: Check for modules with zero db overlap.
18f5f4e 
- Previously such modules would cause an error, now these modules are
skipped.
- Related to #158, #177, #132, #85
@cflerin
Merge branch 'grn_mp_integration' into dev2
6b76c4f
@cflerin
Fix bug in motif url contruction
107fa42 
- Fixes #158
@cflerin cflerin merged commit 5daccba into master Jul 17, 2020
@cflerin cflerin deleted the dev2 branch July 17, 2020 14:20
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