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Antigenic Cartography

The Centre for Pathogen Evolution, Department of Zoology, University of Cambridge, UK

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  1. slurm-pipeline slurm-pipeline Public

    A Python class for scheduling SLURM jobs

    Python 56 11

  2. Racmacs Racmacs Public

    Racmacs R package for performing antigenic cartography

    JavaScript 20 9

  3. beast2-xml beast2-xml Public

    Python code to generate BEAST2 XML files

    Python 17 4

  4. dark-matter dark-matter Public

    Virus discovery

    Python 15 6

  5. figtree-recolor figtree-recolor Public

    A script to re-color a FigTree saved Nexus file

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  6. ncbi-taxonomy-database ncbi-taxonomy-database Public

    How to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher

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Repositories

Showing 10 of 98 repositories
  • dark-matter Public

    Virus discovery

    acorg/dark-matter’s past year of commit activity
    Python 15 MIT 6 36 2 Updated Jul 25, 2024
  • roessler_netzl_et_al2024 Public

    Code repository for the non-human primate antigenic cartography manuscript by Rössler, Netzl, et al. 2024

    acorg/roessler_netzl_et_al2024’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jul 12, 2024
  • midtools Public

    Multiple Infection Detection - Python for detecting multiple infections from sequence reads and trying to pick them apart

    acorg/midtools’s past year of commit activity
    Python 0 0 0 0 Updated Jun 29, 2024
  • Racmacs Public

    Racmacs R package for performing antigenic cartography

    acorg/Racmacs’s past year of commit activity
    JavaScript 20 AGPL-3.0 9 35 1 Updated Jun 27, 2024
  • comparison_of_sars-cov-2_antigenic_characteristics Public
    acorg/comparison_of_sars-cov-2_antigenic_characteristics’s past year of commit activity
    R 0 1 0 0 Updated Apr 9, 2024
  • ncbi-taxonomy-database Public

    How to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher

    acorg/ncbi-taxonomy-database’s past year of commit activity
    Shell 7 MIT 2 1 0 Updated Apr 3, 2024
  • roessler_netzl_et_al2023a Public

    This repository holds the code for the species comparison between human and hamster SARS-CoV-2 neutralisation data, published by Rössler, Netzl et al.

    acorg/roessler_netzl_et_al2023a’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Mar 5, 2024
  • ablandscapes Public

    An R package for making antibody landscapes

    acorg/ablandscapes’s past year of commit activity
    R 2 AGPL-3.0 4 1 0 Updated Feb 28, 2024
  • slurm-pipeline Public

    A Python class for scheduling SLURM jobs

    acorg/slurm-pipeline’s past year of commit activity
    Python 56 MIT 11 2 0 Updated Dec 11, 2023
  • acmacs-base Public

    Scripts and utilities for acmacs-d modules

    acorg/acmacs-base’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 24, 2023
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