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Merge: v3.0.0 documentation updates from deepmodeling/develop into abacusmodeling/develop #201

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merged 34 commits into from
Sep 28, 2022

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@dyzheng dyzheng commented Sep 28, 2022

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hongriTianqi and others added 30 commits September 27, 2022 10:32
* Create soc.md

* Update docs/advanced/scf/soc.md

Co-authored-by: Chun Cai <[email protected]>
* docs : fix two links

* docs : fix hsolver.md, rst does not recognize double dollar sign

* doc : fix some links

* docs : fix some latex expressions in input-main.md

* docs : fix latex expression in input-main.md

Co-authored-by: wenfei-li <[email protected]>
… from abacusmodeling/abacus-develop/develop (deepmodeling#1326)

* Fix: SOC calculation in PW code would caused nan

* Fix: setting of k-points in NSPIN=2 has conflict with Pkpoints in numerical_basis.cpp

* Fix: nscf with hybrid functional 'hse' or 'pbe0' or 'scan0'

* Fix: generating orbitals outputs with nspin=2

* Update the documents for DFT+U

* Modify the help documents of wannier90 and berry phase

Mainly modified Berry_phase.md and Wannier90.md in the docs/advanced/ folder. Adjusted the files in example/interface_wannier90.

* Adjust the file in example/interface_wannier90.

* Revise the error in the documents of DFT+U

* Update docs/advanced/input_files/input-main.md

Co-authored-by: Chun Cai <[email protected]>

Co-authored-by: Qx80610702 <[email protected]>
Co-authored-by: jingan <[email protected]>
Co-authored-by: Chun Cai <[email protected]>
Co-authored-by: Wenfei Li <[email protected]>
* workflow: add dflow script for examples

* improve FindPPORB func in dflow_run.py
* Docs: update initialization.md

* Apply suggestions from code review

Co-authored-by: Wenfei Li <[email protected]>
* docs : add page for faq

Co-authored-by: wenfei-li <[email protected]>
Docs: fix the INPUT of wfc/lcao_ienvelope_Si2
Docs: fix the bug of OMP_NUM_THREADS in examples/xx/xx/run.sh
…lambda in dft+u (deepmodeling#1335)

* docs : add description for a few input variables

Co-authored-by: wenfei-li <[email protected]>
…_elec_XX (deepmodeling#1340)

* doc : update for VdW correction

* doc : fix bug in index.rst

* doc : add another layer in example/vdw

* doc : add link for vdw example

* doc : add part for XC functionals

* docs : update deeph and out_mat_XX

* docs : update session for converging SCF

* docs : update part on structure optimization

* docs : update pp_orb

* docs : add examples

* docs : update typo

* docs : update interface list(only 1 layer)

* docs : update performance.md

* docs : update for outputting of hs matrices

* docs : fix two links

* docs : fix hsolver.md, rst does not recognize double dollar sign

* doc : fix some links

* docs : fix some latex expressions in input-main.md

* docs : fix latex expression in input-main.md

* docs : add page for faq

* docs : add description for a few input variables

* docs : update some expression in input-main.md; add description for td_val_elec_XX

* Apply suggestions from code review

Co-authored-by: Chun Cai <[email protected]>

Co-authored-by: wenfei-li <[email protected]>
Co-authored-by: Chun Cai <[email protected]>
* modified doc advanced.md

* added documentation for SCF complex environment part

* update the deepks interface documentation

* update the documentation

Co-authored-by: hongriTianqi <[email protected]>
Co-authored-by: Wenfei Li <[email protected]>
dflow: strip possible && at end of env_cmd
…undant input files (deepmodeling#1347)

* modified doc advanced.md

* added documentation for SCF complex environment part

* update the deepks interface documentation

* update the documentation

* update overview statement and remove INPUTs in examples/deepks/pw_H2O

Co-authored-by: hongriTianqi <[email protected]>
Co-authored-by: Wenfei Li <[email protected]>
wenfei-li and others added 4 commits September 28, 2022 16:59
…ME.md (deepmodeling#1345)

* docs : remove the old documentation. provide link to new site in README.md

* Update README.md

Co-authored-by: Chun Cai <[email protected]>

* fix : unit test of outp

Co-authored-by: wenfei-li <[email protected]>
Co-authored-by: Chun Cai <[email protected]>
@dyzheng dyzheng merged commit 1c0dee8 into abacusmodeling:develop Sep 28, 2022
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5 participants