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Add images to StereoSeq/Stomics spatial data and generate an RDS(Seurat) and h5ad (Scanpy).
Perplexica is an AI-powered search engine. It is an Open source alternative to Perplexity AI
Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
Supercharge your Obsidian.md canvas experience! Create presentations, flowcharts and more!
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
A platform for creating interactive data visualizations
A database with many Manim users and content creators
An Explorable Explanation of Matrices and Linear Transformations
A collection of 50+ trajectory inference methods within a common interface 📥📤
Scientific reports/literate programming for Julia
Single Cell RNA-seq normalization using regularized negative binomial regression
Finding gene expression states in scRNA-seq data
Visualize and annotate genomic coverage with ggplot2
A Julia package for fitting VAEs to single-cell data using count distributions.
Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
Official repo for the #tidytuesday project
Finding project directories in Python (data science) projects, just like in R rprojroot and here packages
A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.
Progress meter for long-running computations