Add images to StereoSeq/Stomics spatial data and generate an RDS(Seurat) and h5ad (Scanpy).

Perplexica is an AI-powered search engine. It is an Open source alternative to Perplexity AI

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

⚡ Supercharge your Obsidian.md canvas experience! Create presentations, flowcharts and more!

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

A fast, friendly, functional language.

A platform for creating interactive data visualizations

A database with many Manim users and content creators

An Explorable Explanation of Matrices and Linear Transformations

A collection of 50+ trajectory inference methods within a common interface 📥📤

Scientific reports/literate programming for Julia

Load Single Cell 10x data

Single Cell RNA-seq normalization using regularized negative binomial regression

Finding gene expression states in scRNA-seq data

Visualize and annotate genomic coverage with ggplot2

A Julia package for fitting VAEs to single-cell data using count distributions.

From geospatial to spatial -omics

Perturbation Analysis in the scverse ecosystem.

Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

Official repo for the #tidytuesday project

Finding project directories in Python (data science) projects, just like in R rprojroot and here packages

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

Progress meter for long-running computations