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ismrmrd_to_nifti

Overview

This repository contains two convertors :

  • img_h5_to_nii -> reconstructed images in .h5 from gadgetron to nifti
  • gadgetron_to_nii -> reconstruct nifti from a matlab gadget called in gadgetron (work for bucket)
  • raw_h5_to_nii -> dumped .h5 rawdata to nifti (and associated function that can be used to implement the export in a matlab/python gadgets)

img_h5_to_nii

For now only the matlab convertor is implemented (feel free to dev the python one). The main function is : ismrmrd_img_to_nifti.m

raw_h5_to_nii

Implementation in matlab and python. Check the README.md in the subfolder.

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