Stars
The official code for "Towards Generalist Foundation Model for Radiology by Leveraging Web-scale 2D&3D Medical Data".
PyTorch code and models for the DINOv2 self-supervised learning method.
Finetuning DINOv2 (https://github.com/facebookresearch/dinov2) on your own dataset
This is the official repository of our paper "MedTrinity-25M: A Large-scale Multimodal Dataset with Multigranular Annotations for Medicine“
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Baseline methods for gland segmantation
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
Implementation of Segformer, Attention + MLP neural network for segmentation, in Pytorch
Code for ICLR 2015 deeplab-v1 paper "Semantic Image Segmentation with Deep Convolutional Nets and Fully Connected CRFs"
LabelImg is now part of the Label Studio community. The popular image annotation tool created by Tzutalin is no longer actively being developed, but you can check out Label Studio, the open source …
Official Repository of NeurIPS 2023 - MedFM Challenge
[IJCAI'23] Complete Instances Mining for Weakly Supervised Instance Segmentation
DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image
TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.