Seurat 5.0.1 Compatibility Issues

[EJXie]

Hi there,

In the tutorial (https://raw.githack.com/multitalk/awesome-cell-cell-communication/main/method/spot_tutorial.html), when running the code with Seurat Version 5.0.1 for decoding cell-type decomposition (code shown below), there was an error message of " Error in .normalize_data(st_data) : no slot of name "data" for this object of class "Assay5" ".

After changing the Seurat Version to 4.4.0, the error is sorted.

It will be great if you can look into it.

Thank you very much!

decode the cell-type composition

obj <- dec_celltype(object = obj,
sc_data = as.matrix(starmap_data),
sc_celltype = starmap_meta$celltype)

[multitalk]

Thanks for your feedback. We are working on the compatibility with Seurat 5.

[alexanderchang1]

Has there been any update on fixing this issue?

[EJXie]

Has there been any update on fixing this issue?

Hi Chang,

I have checked it again, it does not seem to be fixed yet

[multitalk]

Hello @EJXie @alexanderchang1, now it is compatible with Seurat 5. You can try again.