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R-ICI_MNB_Survival Public
Forked from CRSA-MSI/R-ICI_MNB_SurvivalJupyter Notebook UpdatedJul 20, 2023 -
aCNViewer Public
Forked from FJD-CEPH/aCNViewerComprehensive genome-wide visualization of absolute copy number and copy neutral variations
Python GNU General Public License v3.0 UpdatedOct 25, 2022 -
polysolver-singularity Public
Forked from IARCbioinfo/polysolver-singularityBuilding a Singularity image of Polysolver
BSD 2-Clause "Simplified" License UpdatedSep 18, 2022 -
CellBender Public
Forked from broadinstitute/CellBenderCellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 10, 2022 -
CINSignatureQuantification Public
Forked from markowetzlab/CINSignatureQuantificationQuantifying copy number signatures from new copy number profiles
R Other UpdatedAug 5, 2022 -
sigDriver Public
Forked from wkljohn/sigDriverDriver discovery using mutational signatures
R GNU General Public License v3.0 UpdatedFeb 10, 2022 -
DoAbsolute Public
Forked from ShixiangWang/DoAbsolute📦 Automate Absolute Copy Number Calling using 'ABSOLUTE' package
R Other UpdatedSep 29, 2021 -
copynumber Public
Forked from Irrationone/copynumberThis is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http:https://bioconductor.org/packages/devel/bioc/html/copynumber.html Bug Reports: https://support.bioconductor.org/p/new…
R UpdatedJul 19, 2021 -
gridss-purple-linx Public
Forked from vladsavelyev/gridss-purple-linxStandalone GRIDSS/PURPLE/LINX pipeline
Shell GNU General Public License v3.0 UpdatedApr 26, 2021 -
atac-seq-pipeline Public
Forked from ENCODE-DCC/atac-seq-pipelineENCODE ATAC-seq pipeline
Python MIT License UpdatedJul 5, 2019 -
MuSE Public
Forked from danielfan/MuSESomatic point mutation caller
C++ GNU General Public License v2.0 UpdatedOct 12, 2018 -
ema Public
Forked from arshajii/emaFast & accurate alignment of barcoded short-reads
C++ MIT License UpdatedSep 20, 2018 -
ngseasy Public
Forked from KHP-Informatics/ngseasyDockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
Shell GNU General Public License v2.0 UpdatedAug 30, 2016 -
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
C GNU General Public License v3.0 UpdatedAug 9, 2016 -
bcbio.variation Public
Forked from chapmanb/bcbio.variationToolkit to analyze genomic variation data, built on the GATK with Clojure
Clojure UpdatedNov 2, 2015 -
bamdst Public
Forked from shiquan/bamdsta lightweight bam file depth statistical tool
C UpdatedSep 28, 2015 -
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GATK-QScripts Public
Forked from UMCUGenetics/GATK-QScriptsGATK QScripts used in our illumina variant calling pipeline.
Scala MIT License UpdatedMay 1, 2014 -
gatk-protected Public
Forked from broadgsa/gatk-protectedGATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
Java UpdatedMay 1, 2013 -