Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets

A napari plugin for clustering objects according to their properties.

DLClibrary is a lightweight library supporting universal functions for the DeepLabCut ecosystem.

BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.

DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.

NEural MOdelS, a statistical modeling framework for neuroscience.

A napari plugin to process and analyse images with chatGPT!

A scikit-learn compatible neural network library that wraps PyTorch

Jan is an open source alternative to ChatGPT that runs 100% offline on your computer. Multiple engine support (llama.cpp, TensorRT-LLM)

Automated 3D brain registration with support for multiple species and atlases.

Automated 3D brain registration in napari with support for multiple species and atlases.

A Lightning app for animal pose estimation.

Ensembling and kalman smoothing for pose estimation

A lightweight python module to interact with atlases for systems neuroscience

Python tools for analysing body movements across space and time

A Python toolkit/library for reality-centric machine/deep learning and data mining on partially-observed time series, including SOTA neural network models for scientific analysis tasks of imputatio…

A napari plugin to render BrainGlobe atlases and associated data as layers.

The plug-and-play, browser-accessible, containerised data analysis environment.

(EMBC 2020) Camera-based Hand Tracking using a Mirror-based Multi-view Setup

The compiler, IDE, and standard library for the Bonsai visual programming language for reactive systems

🎴 An Anki plugin for Obsidian.md

Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.

Code package that allows meta analyses of unsupervised behavior results

R Scripts to analyze deep lab cut point data and related data

Use ImageJ functionality from napari