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@WayScience

The Way Lab

The Way Lab at CU Anschutz

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  1. phenotypic_profiling phenotypic_profiling Public

    Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles

    Jupyter Notebook 1 3

  2. CytoSnake CytoSnake Public

    Orchestrating high-dimensional cell morphology data processing pipelines

    Python 3 3

  3. nf1_cellpainting_data nf1_cellpainting_data Public

    This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

    Jupyter Notebook 4 5

  4. IDR_stream IDR_stream Public

    Software for feature extraction from IDR image data

    Jupyter Notebook 4 2

  5. JUMP-single-cell JUMP-single-cell Public

    Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)

    Jupyter Notebook 3 4

  6. pyroptosis_signature_image_profiling pyroptosis_signature_image_profiling Public

    This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

    Jupyter Notebook 2 3

Repositories

Showing 10 of 59 repositories
  • coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    WayScience/coSMicQC’s past year of commit activity
    Python 2 BSD-3-Clause 3 20 2 Updated Aug 3, 2024
  • NF1_SchwannCell_data_analysis Public
    WayScience/NF1_SchwannCell_data_analysis’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 2 3 1 Updated Aug 2, 2024
  • gene_dependency_representations Public
    WayScience/gene_dependency_representations’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 5 0 1 Updated Jul 31, 2024
  • MNIST_TD-VAE Public Forked from xqding/TD-VAE

    Temporal Difference Variational Auto-Encoder (TD-VAE) (Implementation in PyTorch)

    WayScience/MNIST_TD-VAE’s past year of commit activity
    Python 0 26 0 3 Updated Jul 31, 2024
  • live_cell_timelapse_apoptosis_analysis Public
    WayScience/live_cell_timelapse_apoptosis_analysis’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 1 2 Updated Jul 31, 2024
  • nuclear_speckle_image_analysis Public

    Image analyis and image-based profiling of nuclear speckle dataset extracting intensity based features.

    WayScience/nuclear_speckle_image_analysis’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 1 2 0 Updated Jul 31, 2024
  • pyroptosis_signature_data_analysis Public

    Analysis repository for the pyroptosis morphology map

    WayScience/pyroptosis_signature_data_analysis’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 1 15 0 Updated Jul 30, 2024
  • nf1_cellpainting_data Public

    This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

    WayScience/nf1_cellpainting_data’s past year of commit activity
    Jupyter Notebook 4 CC0-1.0 5 6 0 Updated Jul 30, 2024
  • CFReT_data Public

    Image-based analysis of cardiac fibroblast datasets to uncover proprietary drug impact on reversing fibrosis

    WayScience/CFReT_data’s past year of commit activity
    Jupyter Notebook 3 CC0-1.0 4 6 0 Updated Jul 26, 2024
  • temporal_ViT Public

    This is the develpment of a temporal ViT using the MNIST dataset

    WayScience/temporal_ViT’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 1 Updated Jul 24, 2024
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