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7T
7T
 
 
ApplyHandReClassification
ApplyHandReClassification
 
 
CheckFunctionalPreprocessingHCP
CheckFunctionalPreprocessingHCP
 
 
DeDriftAndResample
DeDriftAndResample
 
 
DiffusionPreprocessing
DiffusionPreprocessing
 
 
DiffusionPreprocessingHCP
DiffusionPreprocessingHCP
 
 
FunctionalPreprocessing
FunctionalPreprocessing
 
 
FunctionalPreprocessingHCP
FunctionalPreprocessingHCP
 
 
GeneratePackageReport
GeneratePackageReport
 
 
GenerateSpinEchoBiasFieldPrereqs
GenerateSpinEchoBiasFieldPrereqs
 
 
GetHcpDataUtils
GetHcpDataUtils
 
 
HandReclassificationPackaging
HandReclassificationPackaging
 
 
HcpRestUtils
HcpRestUtils
 
 
IcaFixProcessingHCP
IcaFixProcessingHCP
 
 
MSMAllRegistration
MSMAllRegistration
 
 
MSMRemoveGroupDrift
MSMRemoveGroupDrift
 
 
MakeAverageDataset
MakeAverageDataset
 
 
MsmAllPackaging
MsmAllPackaging
 
 
MsmAllProcessing
MsmAllProcessing
 
 
MultiRunIcaFixProcessing
MultiRunIcaFixProcessing
 
 
PackageUtils
PackageUtils
 
 
PostFixHCP
PostFixHCP
 
 
PostMsmAllTaskAnalysis
PostMsmAllTaskAnalysis
 
 
ReApplyFix
ReApplyFix
 
 
RestingStateStats
RestingStateStats
 
 
StructuralPreprocessing
StructuralPreprocessing
 
 
StructuralPreprocessingHCP
StructuralPreprocessingHCP
 
 
StructuralPreprocessingHandEdit
StructuralPreprocessingHandEdit
 
 
TaskAnalysis
TaskAnalysis
 
 
ToolSetupScripts
ToolSetupScripts
 
 
WorkingDirPut
WorkingDirPut
 
 
bedpostx
bedpostx
 
 
correct_task_analysis_packages
correct_task_analysis_packages
 
 
docgen
docgen
 
 
lib
lib
 
 
shlib
shlib
 
 
subject_selection
subject_selection
 
 
tools
tools
 
 
.gitignore
.gitignore
 
 
README.md
README.md
 
 
product.txt
product.txt
 
 
show_version
show_version
 
 
version.txt
version.txt
 
 

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HCPpipelinesXnatPbsUtils

Utilities for:

  • retrieving data from XNAT archive resources
  • running HCPpipeline processing
  • pushing resulting data back into XNAT archive resources
  • checking for completeness of processing
  • keeping track of the current run status of various processing jobs
  • etc

Much of the work is done via submitting jobs to a PBS job scheduler

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HCA/HCD Hand editing plus tmp directory bind fix (CORRECTED) Latest
Aug 29, 2020
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