Skip to content

WarrenWeckesser/analyze-scipy-code

Repository files navigation

Assorted scripts that I use to analyze the SciPy source code.

  • dists_that_override.py: Display which of the SciPy univariate continuous distributions override the given method names. For example,

    $ python dists_that_override.py _cdf _ppf _sf _isf _rvs
    SciPy version 1.11.0.dev0+1566.d5ceb77
    
    distribution         _cdf _ppf _sf  _isf _rvs
    alpha                ✔    ✔    -    -    -
    anglit               ✔    ✔    -    -    -
    arcsine              ✔    ✔    -    -    -
    argus                ✔    -    ✔    -    ✔
    beta                 ✔    ✔    ✔    ✔    ✔
    betaprime            ✔    ✔    -    -    ✔
    bradford             ✔    ✔    -    -    -
    burr                 ✔    ✔    ✔    -    -
    [...]
    wald                 ✔    ✔    ✔    ✔    ✔
    weibull_max          ✔    ✔    ✔    -    -
    weibull_min          ✔    ✔    ✔    -    -
    wrapcauchy           ✔    ✔    -    -    -
    
  • find_functions_missing_examples.py: Find functions whose docstring is missing the "Examples" section.

  • find_missing_import_np.py: Find functions where there is an "Examples" section that uses the name np but that do not have a corresponding import numpy as np.

  • find_docstring_issues.py: (Work in progress) Looks for several common issues in the docstrings. For example,

    $ python find_docstring_issues.py sparse
    scipy version 1.10.0.dev0+2299.5beb395
    
    === sparse ===
    sparse.block_diag
        section out of order: 'See Also'
    sparse.diags
        missing section: 'Returns'
    sparse.eye
        missing section: 'Returns'
    sparse.hstack
        missing section: 'Returns'
    sparse.identity
        missing section: 'Returns'
    sparse.rand
        section out of order: 'See Also'
    sparse.random
        duplicated imports in Examples:
            >>> from scipy.sparse import random
    sparse.save_npz
        missing section: 'Returns'
    sparse.spdiags
        missing section: 'Returns'
    sparse.vstack
        missing section: 'Returns'
    
  • extract_example_code.py: Extract the code from the 'Examples' section of the SciPy object.

    For example,

    $ python extract_example_code.py scipy.special.logsumexp
    Code from the 'Examples' section of scipy.special.logsumexp written to 'example_logsumexp.py'.
    $ cat example_logsumexp.py
    # Python code extracted from the 'Examples' section of
    # scipy.special.logsumexp
    
    import numpy as np
    from scipy.special import logsumexp
    a = np.arange(10)
    logsumexp(a)
    np.log(np.sum(np.exp(a)))
    a = np.arange(10)
    b = np.arange(10, 0, -1)
    logsumexp(a, b=b)
    np.log(np.sum(b*np.exp(a)))
    logsumexp([1,2],b=[1,-1],return_sign=True)
    a = np.ma.array([np.log(2), 2, np.log(3)],
                    mask=[False, True, False])
    b = (~a.mask).astype(int)
    logsumexp(a.data, b=b), np.log(5)
    

About

Assorted tools used to analyze SciPy's source code

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages