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mkdocs.yml
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site_name: PennCNV
site_url: https://penncnv.openbioinformatics.org/
repo_url: https://github.com/WGLab/PennCNV/
repo_name: GitHub
site_description: PennCNV software distribution site
site_author: Kai Wang, et al
#site_favicon: favicon.ico #favicon.ico is removed from MkDocs; To use a different icon, create an img subdirectory in your docs_dir and copy your custom favicon.ico file to that directory
copyright: 2007-2022 PennCNV
google_analytics: ['UA-7565671-1', 'www.openbioinformatics.org/penncnv']
docs_dir: docs
#include_search: true
#use_absolute_urls: true
#use_directory_urls: false
nav:
- Home: 'index.md'
- User Guide:
- 'Download PennCNV': 'user-guide/download.md'
- 'Install PennCNV': 'user-guide/install.md'
- 'Quick Start-Up Guide': 'user-guide/startup.md'
- 'Prepare Input Files': 'user-guide/input.md'
- 'CNV calling': 'user-guide/test.md'
- 'Trio-based CNV calling': 'user-guide/trio.md'
- 'Joint-based CNV calling': 'user-guide/joint.md'
- 'de novo CNV calling': 'user-guide/denovo.md'
- 'Validation-based CNV calling': 'user-guide/validation.md'
- 'CNV annotation': 'user-guide/annotation.md'
- 'CNV visualization': 'user-guide/visualization.md'
- 'PennCNV-Affy': 'user-guide/affy.md'
- 'PennCNV Plug-in': 'user-guide/plugin.md'
- Misc:
- 'FAQ': 'misc/faq.md'
- 'Version History': 'misc/version_history.md'
- 'Credit': 'misc/credit.md'
- 'How to Contribute': 'misc/contributing.md'