This plugin supports reading TileDB-BioImaging multi-resolution arrays within Napari.
napari-tiledb-bioimg-demo.720p.mp4
You can install napari-tiledb-bioimg
via [pip]:
pip install napari-tiledb-bioimg
After ingesting data using tiledb-bioimg
, then:
-
Local images may be loaded using Napari's
File -> Open Folder
, and selecting the TileDB array folder. Choose thenapari-tiledb-bioimg
plugin, if prompted. -
Remote arrays (S3, TileDB Cloud) may be loaded using either the
napari
CLI command:
napari --plugin napari-tiledb-bioimg s3:https://<bucket>/<path/to/tiledb_array>
- or the Napari viewer
load
command within a Python prompt:
# Within a Napari-enabled Python/IPython prompt, run:
import napari
viewer = napari.Viewer()
viewer.open("tiledb:https://<namespace>/<array name or UUID>", plugin="napari-tiledb-bioimg")
Contributions are very welcome. Tests can be run with tox or pytest.
pip install git+https://github.com/TileDB-Inc/napari-tiledb-bioimg.git
Distributed under the terms of the MIT license, "napari-tiledb-bioimg" is free and open source software.
If you encounter any problems, please file an issue along with a detailed description.