Detailed change list https://documentation.tgac.ac.uk/display/NANOOK/Change+history

Fixed issues with 1D report generation.
Added warnings about .sizes file.
New real-time watcher option for BAMBI project. Currently, this is not general purpose, but will be enabled in future release.
Created new Dockerfile and re-built Docker images.
Added support for barcoded runs.

New option to store original FAST5 path in FASTA output file (for nanopolish).
Fixed issue with alignerparams not being passed through.
Enabled extraction of 2D only reads.
Better detection of old/new style directory structure.
Various bug fixes.

Added support for Metrichor changes to FAST5 output format.
Added support for multiple analyses in 1 file (i.e. /Analyses/Basecall_2D_XXX). New option -basecallindex to support it, but default behaviour is latest (highest numbered analysis).
Replaced the NANOOK_SCRIPT_DIR environment variable with a NANOOK_DIR one and slightly changed installation process.