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@T2DREAM

Common Metabolic Disease Genome Atlas

The Common Metabolic Disease Genome Atlas (CMDGA) resource is a component of AMP-CMD

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  1. t2dream-portal t2dream-portal Public

    The Common Metabolic Disease Genome Atlas (CMDGA) resource is a component of AMP-CMD being developed at the University of California San Diego as part of a larger consortium of academic, industry a…

    Python 4 8

  2. crocpot crocpot Public

    CROCPOT is a repository of epigenomic datasets linking distal cis-regulatory elements to their putative target genes including 3D chromatin interactions, single cell co-activity, activity-by-contac…

    JavaScript

  3. expression-profiling-app expression-profiling-app Public

    The Gene Expression Profiling App displays the snRNA-seq data

    R 1

  4. snovault snovault Public

    The resource is based on software developed by the ENCODE DCC at Stanford University.

    Python 2

  5. lung-epigenome lung-epigenome Public

    The goal of this project is to provide data on the genome and epigenome of the human lung to facilitate research efforts of investigators studying diseases of the lung including COVID-19.

    Python

  6. cellxgene-gateway cellxgene-gateway Public

    Forked from Novartis/cellxgene-gateway

    Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

    Python

Repositories

Showing 10 of 24 repositories
  • t2dream-portal Public

    The Common Metabolic Disease Genome Atlas (CMDGA) resource is a component of AMP-CMD being developed at the University of California San Diego as part of a larger consortium of academic, industry and non-profit institutions worldwide. The resource is based on software developed by the ENCODE DCC at Stanford University.

    T2DREAM/t2dream-portal’s past year of commit activity
    Python 4 MIT 8 0 3 Updated Jul 25, 2024
  • snovault Public

    The resource is based on software developed by the ENCODE DCC at Stanford University.

    T2DREAM/snovault’s past year of commit activity
    Python 0 MIT 2 0 1 Updated May 23, 2023
  • cellxgene-gateway Public Forked from Novartis/cellxgene-gateway

    Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

    T2DREAM/cellxgene-gateway’s past year of commit activity
    Python 0 Apache-2.0 32 0 0 Updated Jan 21, 2023
  • variant-nw Public

    Variant Network Visualization Tool. Credit for Dash tool @smorabit

    T2DREAM/variant-nw’s past year of commit activity
    Python 0 0 0 8 Updated Dec 26, 2022
  • dig-aggregator-methods Public Forked from broadinstitute/dig-aggregator-methods

    Monorepo of methods implemented for the Aggregator

    T2DREAM/dig-aggregator-methods’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated May 17, 2022
  • demultiplex Public

    Pipeline for demultiplexing and doublet detection + checking method robustness

    T2DREAM/demultiplex’s past year of commit activity
    0 1 0 0 Updated Dec 23, 2021
  • dig-bioindex Public Forked from broadinstitute/dig-bioindex

    BIO index for genetic records stored in S3 and FastAPI server.

    T2DREAM/dig-bioindex’s past year of commit activity
    Python 0 BSD-3-Clause 2 0 0 Updated Nov 18, 2021
  • dig-loam-stream Public Forked from broadinstitute/dig-loam-stream

    dig-loam-stream

    T2DREAM/dig-loam-stream’s past year of commit activity
    Scala 0 1 0 0 Updated Nov 18, 2021
  • expression-profiling-app Public

    The Gene Expression Profiling App displays the snRNA-seq data

    T2DREAM/expression-profiling-app’s past year of commit activity
    R 0 MIT 1 0 0 Updated Sep 7, 2021
  • react-annotation-graph Public

    This application links Co-accessibility of distal regulatory variants to putative target genes

    T2DREAM/react-annotation-graph’s past year of commit activity
    JavaScript 1 0 0 2 Updated Jul 20, 2021
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