-
Clinical Genomics Uppsala / Uppsala University
- Uppsala
-
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedSep 24, 2024 -
galaxy Public
Forked from galaxyproject/galaxyData intensive science for everyone.
Python Other UpdatedAug 20, 2024 -
biocontainers Public
Forked from BioContainers/containersBioinformatics containers
Dockerfile Apache License 2.0 UpdatedJul 9, 2024 -
-
snakemake-wrappers Public
Forked from snakemake/snakemake-wrappersThis is the development home of the Snakemake wrapper repository, see
CAP CDS UpdatedOct 23, 2023 -
-
FuSeq_WES Public
Forked from nghiavtr/FuSeq_WESR GNU General Public License v3.0 UpdatedApr 14, 2023 -
-
arteria-packs Public
Forked from arteria-project/arteria-packsStackStorm packs to automate sequencing center operations
Python MIT License UpdatedNov 28, 2022 -
snakemake Public
Forked from snakemake/snakemakeThis is the development home of the workflow management system Snakemake. For general information, see
HTML MIT License UpdatedNov 7, 2022 -
docker-backupninja-1 Public
Forked from InAnimaTe/docker-backupninjaA backupninja container for handling backups.
Dockerfile UpdatedOct 12, 2022 -
docker-backupninja Public
Forked from sismics/docker-backupninjaDockerfile for Backupninja
Shell Apache License 2.0 UpdatedOct 12, 2022 -
pgx Public
Forked from Genomic-Medicine-Linkoping/pgxPharmacogenomics pipeline
Python GNU General Public License v3.0 UpdatedSep 16, 2022 -
pgx_module Public
Forked from JoelAAs/pgx_moduleAnlysis of pharmacogenomic targets from Genomic Medicine Swedens heamatology panel.
Python MIT License UpdatedAug 22, 2022 -
twist_exome_38 Public
Forked from zezzipa/twist_exome_38Python GNU General Public License v3.0 UpdatedJun 13, 2022 -
-
-
-
multiqc_cgs Public
MultiQC plugin that will make it possible to add more columns to general statistics table
Python GNU General Public License v3.0 UpdatedNov 25, 2021 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedNov 11, 2021 -
dna-seq-varlociraptor Public
Forked from snakemake-workflows/dna-seq-varlociraptorA Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of …
Python MIT License UpdatedSep 7, 2021 -
tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedSep 7, 2021 -
rna-seq-star-deseq2 Public
Forked from snakemake-workflows/rna-seq-star-deseq2RNA-seq workflow using STAR and DESeq2
Python MIT License UpdatedSep 6, 2021 -
wgs_std_viper Public
Forked from marrip/wgs_std_viperSimple workflow to map WGS data to reference genome according to GATK best practices
Python MIT License UpdatedSep 1, 2021 -
-
arteria-bcl2fastq Public
Forked from arteria-project/arteria-bcl2fastqProvides a simple http-interface for Illumina bcl2fastq
Python MIT License UpdatedFeb 10, 2021 -
ansible-bender Public
Forked from ansible-community/ansible-benderansible-playbook + buildah = a sweet container image
Python MIT License UpdatedSep 4, 2020 -
st2-docker Public
Forked from StackStorm/st2-dockerStackStorm docker-compose deployment
Shell Apache License 2.0 UpdatedJul 24, 2020 -
MultiQC_TestData Public
Forked from MultiQC/test-dataTest data for MultiQC. See https://github.com/ewels/MultiQC
HTML MIT License UpdatedOct 17, 2019 -
gms_somatic Public
Forked from genomic-medicine-sweden/gms_somaticPlaceholder for solid tumor bioinformatic workflow
MIT License UpdatedAug 23, 2019