Deep-learning based particle picking program for single particle cryo-EM.
This version is based on VGGNet (Very Deep Convolutional Networks) and originally contributed by Yinping Ma.

Python 3
Tensorflow 1.9
Mrcfile https://mrcfile.readthedocs.io/en/latest/index.html
Other python packages mentioned in the code

Edit args_vgg19.py to change parameters
Training: python train.py
Picking: python predict.py

http:https://ipccsb.dfci.harvard.edu/deepem/index.html

Y. Zhu, Q. Ouyang, Y. Mao. A deep convolutional neural network approach to single-particle recognition in cryo-electron microscopy. BMC Bioinformatics 18, 348 (2017). Learn More. arXiv: 1605.05543.