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@Shao-Group

Shao Group

Research Group in Computational Biology at Penn State

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  1. lecture-notes-for-algorithms lecture-notes-for-algorithms Public

    TeX 25

  2. cmpsc465-fa20 cmpsc465-fa20 Public

    Python 19 40

  3. scallop2 scallop2 Public

    C++ 9 7

  4. subseqhash subseqhash Public

    C++ 7

  5. rnabridge-align rnabridge-align Public

    rnabridge-align is an efficient tool to bridge paired-end RNA-seq reads

    C++ 5 1

  6. SubseqHash2 SubseqHash2 Public

    Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences

    C++ 4

Repositories

Showing 10 of 36 repositories
  • repeatFinder Public
    Shao-Group/repeatFinder’s past year of commit activity
    0 0 0 0 Updated Jul 21, 2024
  • scallop2 Public
    Shao-Group/scallop2’s past year of commit activity
    C++ 9 BSD-3-Clause 7 4 0 Updated Jul 9, 2024
  • anchorage-test Public
    Shao-Group/anchorage-test’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jul 8, 2024
  • aletsch Public

    Assembler for multiple RNA-seq samples

    Shao-Group/aletsch’s past year of commit activity
    C++ 2 BSD-3-Clause 1 1 0 Updated Jun 25, 2024
  • anchorage Public
    Shao-Group/anchorage’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jun 21, 2024
  • bamkit Public

    A tool to process bam/sam files

    Shao-Group/bamkit’s past year of commit activity
    C++ 1 BSD-3-Clause 1 0 1 Updated Jun 20, 2024
  • scAletsch-test Public
    Shao-Group/scAletsch-test’s past year of commit activity
    Shell 0 0 0 0 Updated May 21, 2024
  • scAletsch Public
    Shao-Group/scAletsch’s past year of commit activity
    C++ 0 BSD-3-Clause 0 0 0 Updated May 21, 2024
  • projectname Public
    Shao-Group/projectname’s past year of commit activity
    0 0 0 0 Updated Mar 29, 2024
  • lsb-learn Public

    A learning algorithm for locality-sensitive bucketing functions

    Shao-Group/lsb-learn’s past year of commit activity
    Python 0 2 0 0 Updated Mar 19, 2024
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