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Project_Programming Public
A portfolio of programming work affiliated with miscellaneous molecular and clinical research projects
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NGSOmics_Programming Public
Computational biology/bioinformatics workflows, codes, and concept notes on NGS data
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Python_Programming Public
Python codes related to medical artificial intelligence, machine learning, bioinformatics algorithms, and computer science for python programming, among others
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PyDESeq2 Public
Forked from owkin/PyDESeq2A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Python MIT License UpdatedMar 1, 2024 -
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fastp Public
Forked from OpenGene/fastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
C++ MIT License UpdatedFeb 12, 2024 -
hdWGCNA Public
Forked from smorabit/hdWGCNAHigh dimensional weighted gene co-expression network analysis
R Other UpdatedJan 10, 2024 -
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pattern_analysis Public
A package for analyzing patterns in biological data.
Python MIT License UpdatedDec 27, 2023 -
atac-seq-pipeline Public
Forked from ENCODE-DCC/atac-seq-pipelineENCODE ATAC-seq pipeline
Python MIT License UpdatedDec 22, 2023 -
cookiecutter Public
Forked from cookiecutter/cookiecutterA cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 16, 2023 -
cookiecutter-data-science Public
Forked from drivendataorg/cookiecutter-data-scienceA logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
Python MIT License UpdatedDec 14, 2023 -
GSEApy Public
Forked from zqfang/GSEApyGene Set Enrichment Analysis in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 8, 2023 -
vast-tools Public
Forked from vastgroup/vast-toolsA toolset for profiling alternative splicing events in RNA-Seq data.
Perl MIT License UpdatedDec 6, 2023 -
sphinx Public
Forked from sphinx-doc/sphinxThe Sphinx documentation generator
Python Other UpdatedDec 4, 2023 -
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Harvard_Bioinformatics_Knowledgebase Public
Forked from hbc/knowledgebaseThis is the bioinformatics knowledgebase from Harvard Chan Bioinformatics Core
TeX UpdatedDec 1, 2023 -
bowtie2 Public
Forked from BenLangmead/bowtie2A fast and sensitive gapped read aligner
C++ GNU General Public License v3.0 UpdatedNov 17, 2023 -
gatk Public
Forked from broadinstitute/gatkOfficial code repository for GATK versions 4 and up
Java Other UpdatedNov 17, 2023 -
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minimap2 Public
Forked from lh3/minimap2A versatile pairwise aligner for genomic and spliced nucleotide sequences
C Other UpdatedOct 30, 2023 -
Database_Programming Public
SQL database, Cloudant NoSQL database, LeetCode materials
Shell UpdatedOct 29, 2023 -
Exomiser Public
Forked from exomiser/ExomiserA Tool to Annotate and Prioritize Exome Variants
Java GNU Affero General Public License v3.0 UpdatedOct 26, 2023 -
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SUPPA Public
Forked from comprna/SUPPASUPPA: Fast quantification of splicing and differential splicing
Python MIT License UpdatedOct 5, 2023 -
modern-unix Public
Forked from ibraheemdev/modern-unixA collection of modern/faster/saner alternatives to common unix commands.
UpdatedOct 3, 2023 -
codeclimate Public
Forked from codeclimate/codeclimateAnalyze code's readability (e.g., point out when a function is getting too long or even if the code is confusing in spots)
Ruby GNU Affero General Public License v3.0 UpdatedSep 26, 2023