Mergeback of FEATURE_chunk_control branch
#5588
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* Dask chunking control for netcdf loading. * renamed loader * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix indentation error, perhaps also docstring error * fixed result error in loader, and set tests to treat as big files * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * trial and error, solve non iterable tuple 1.0 * trial and error, solve non iterable tuple 2.0 (used if var is none: instead of if var: ) * commented out docstring * fixed mock 'no name' failure * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed precommit issues * corrected docstrings as per review comments * Removed unnecessary line Co-authored-by: Martin Yeo <[email protected]> --------- Co-authored-by: Patrick Peglar <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Martin Yeo <[email protected]>
* added modes * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * added as_dask mode * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * cleaned up enum and as_dask, as per review comments * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * corrected to in final place * unindented lazy_param assignment one indent --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
FEATURE_chunk_control branch
trexfeathers
commented
Nov 20, 2023
trexfeathers
commented
Nov 20, 2023
* converted tests to pytest, added neg_one, and incomplete from_file and as_dask tests * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * added from_file test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * added mocking tests * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * trial and error with mocks and patches, may or may not work * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * converted Mock to patch in as_dask test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * review comment changes * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * pre commit fixes * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * review comments, and added test in test__get_cf_var_data() * added in another test * added tests and fixed review comments * added AuxCoord test --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #5588 +/- ##
==========================================
+ Coverage 89.63% 89.68% +0.04%
==========================================
Files 90 90
Lines 22711 22815 +104
Branches 5418 5445 +27
==========================================
+ Hits 20358 20462 +104
Misses 1619 1619
Partials 734 734 ☔ View full report in Codecov by Sentry. |
* Disallow chunks=None in optimum_chunksize. * Clearer docstrings. * Corrected docstring.
This was referenced Nov 21, 2023
* init PR, skeleton TP * whoops, missed the TP. * fixed doctests in rst file * correct triple chevron to elipses * updated set doctest to better show functionality * removed in-progress doctest code * Review comments, part 1 * Review comments, part 2 * changed numpy docs dict * wait, this way is better * fixed linkcheck failures (maybe) * fixed :meth: * fixed a couple doc bits * hopefully fixed doctests * newest review comments * fixed rendering, and wording in docstring * fixed docstring numpyness
* written whatsnew entry * added ref * moved label to before title
ESadek-MO
approved these changes
Nov 23, 2023
There was a problem hiding this comment.
Been reviewed PR by PR, so happy for this to go in. Thanks @trexfeathers
tkknight
added a commit
to tkknight/iris
that referenced
this pull request
Nov 27, 2023
* upstream/main: Mergeback of `FEATURE_chunk_control` branch (SciTools#5588) [CI Bot] environment lockfiles auto-update (SciTools#5547) Mergeback of "Feature _split_attrs" branch (SciTools#5152) add whatsnew (SciTools#5596) Refactor area weighted regridding, improve performance (SciTools#5543) Allowing exemption to axis guessing on coords (SciTools#5551)
tkknight
added a commit
to tkknight/iris
that referenced
this pull request
Dec 6, 2023
* main: DOCS: Numpydocs1 (SciTools#5578) add links to scitools-classroom repo. (SciTools#5609) Feedstock rc branch management in do-nothing script (SciTools#5515) Relocated the Technical Papers documentation to Further Topics. (SciTools#5602) Fix pp save of realization coordinate (SciTools#5568) Bump actions/checkout from 3 to 4 (SciTools#5460) Bump actions/github-script from 6 to 7 (SciTools#5580) Bump conda-incubator/setup-miniconda from 2 to 3 (SciTools#5607) CI: specify matplotlib-base (SciTools#5606) Mergeback of `FEATURE_chunk_control` branch (SciTools#5588) [CI Bot] environment lockfiles auto-update (SciTools#5547) Mergeback of "Feature _split_attrs" branch (SciTools#5152) add whatsnew (SciTools#5596) Refactor area weighted regridding, improve performance (SciTools#5543) Allowing exemption to axis guessing on coords (SciTools#5551)
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
🚀 Pull Request
Description
Still a draft at this time. Raised to test merge-ability, have an account of the full diff, and to get a coverage report.
Consult Iris pull request check list