Respect pseudo count amount in dvstar #11

	name: CMake

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	env:
	# Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
	BUILD_TYPE: Release

	jobs:
	build:
	# The CMake configure and build commands are platform agnostic and should work equally well on Windows or Mac.
	# You can convert this to a matrix build if you need cross-platform coverage.
	# See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix
	runs-on: ubuntu-latest

	steps:
	- name: Install dependencies
	run: sudo apt-get install -y libtbb-dev libgomp1

	- name: Checkout repository and submodules
	uses: actions/checkout@v3
	with:
	submodules: recursive

	- name: Configure CMake
	# Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make.
	# See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type
	run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DCountVLMC_COMPILE_TESTS=ON

	- name: Build
	# Build your program with the given configuration
	run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}}

	- name: Test
	working-directory: ${{github.workspace}}/build/tests
	run: ./kmer_tests && ./similarity_pruning_tests && ./support_pruning_tests

	- uses: actions/upload-artifact@v3
	with:
	name: upload build_vlmc artifact
	path: ${{github.workspace}}/build/dvstar

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