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@SACEMA

SACEMA

DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis

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  1. inctools inctools Public

    Incidence Estimation Tools

    R 6 4

  2. COVID10k COVID10k Public

    Estimating time to 10,000 COVID-19 cases in SA

    R 6

  3. omicronSA omicronSA Public

    R 4

  4. severity-monitoring severity-monitoring Public

    SARS-CoV-2 severity monitoring project

    R 2

  5. reinfectionsBelinda reinfectionsBelinda Public

    Repository for Belinda's MSc work on reinfections

    R 1

  6. incidence-synthetic-cohort incidence-synthetic-cohort Public

    Performs basic HIV incidence Estimation according to the method of Mahiane et al (A general HIV incidence inference scheme based on likelihood of individual level data and a population renewal equa…

    R 1

Repositories

Showing 10 of 26 repositories
  • reinfectionsBelinda Public

    Repository for Belinda's MSc work on reinfections

    SACEMA/reinfectionsBelinda’s past year of commit activity
    R 1 0 0 0 Updated Sep 19, 2023
  • rd Public

    Research Days

    SACEMA/rd’s past year of commit activity
    0 0 0 0 Updated Aug 31, 2023
  • severity-monitoring Public

    SARS-CoV-2 severity monitoring project

    SACEMA/severity-monitoring’s past year of commit activity
    R 2 0 8 0 Updated Mar 17, 2023
  • inctools Public

    Incidence Estimation Tools

    SACEMA/inctools’s past year of commit activity
    R 6 GPL-3.0 4 8 0 Updated Aug 10, 2022
  • R_est_sa Public

    Code for the last steps in the reproduction number (R) estimation pipeline described in https://www.medrxiv.org/content/10.1101/2022.07.22.22277932v1.full

    SACEMA/R_est_sa’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Aug 1, 2022
  • omicronSA Public
    SACEMA/omicronSA’s past year of commit activity
    R 4 0 10 0 Updated Jun 23, 2022
  • infection-dating-tool Public

    Django app for the Infection Dating Tool

    SACEMA/infection-dating-tool’s past year of commit activity
    Python 0 1 0 7 Updated Jun 21, 2022
  • omicron_reinfections Public

    Increased risk of SARS-CoV-2 reinfection associated with emergence of the Omicron variant in South Africa (Pulliam et al. 2021)

    SACEMA/omicron_reinfections’s past year of commit activity
    0 0 0 0 Updated Nov 30, 2021
  • repo_template Public

    Repository template for student modelling projects

    SACEMA/repo_template’s past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 29, 2021
  • secondWaves Public
    SACEMA/secondWaves’s past year of commit activity
    R 0 0 0 0 Updated Feb 4, 2021
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