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RCon3D Public
3D Analysis of confocal images of microbial biofilms/communities
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SmellyShirts Public
Scripts and data for: The T-shirt microbiome is distinct between individuals and shaped by washing and fabric type
R UpdatedJun 5, 2024 -
MAGinator Public
MAGinator - Accurate SNV calling and profiling of MAGs
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SRUFinder Public
Detect and subtype SRUs, mini-arrays, and CRISPR arrays by repeat matching
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CRISPRCasTyper Public
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
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MicEco Public
Various functions for analysis of microbial community data
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alphafold_non_docker Public
Forked from kalininalab/alphafold_non_dockerAlphaFold2 non-docker setup
Shell UpdatedApr 26, 2022 -
DAtest Public
Compare different differential abundance and expression methods
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CRISPRCas_on_Plasmids Public
This is the code repository for reproducing analyses in the paper: CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids
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bigSCale2 Public
Forked from iaconogi/bigSCale2Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
R UpdatedJun 9, 2021 -
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jobson Public
Forked from adamkewley/jobsonA platform for transforming command-line applications into a job service.
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annotation Public
Pipeline to run multiple tools to annotate prokaryotic genomes and parse output
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run_dbcan Public
Forked from linnabrown/run_dbcanRun_dbcan V2, using genomes/metagenomes/proteomes of any orgaisms(prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
C UpdatedMay 7, 2019 -
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