Using the jedi autocompletion library for VIM.

A Grammar of Graphics for Python

Scripts to download genomes from the NCBI FTP servers

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Variational autoencoder for metagenomic binning

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

CarveMe: genome-scale metabolic model reconstruction

Virus Identification By iteRative ANnoTation

De novo Extraction of Strains from MetAgeNomes

SMETANA: a tool to analyse interactions in microbial communities