Stars
A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-s…
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
A Python script which allows users to export workout data from Mi Fit and Zepp applications.
Use an ensemble of variant callers to call variants from ATAC-seq data
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps usi…