Scripts and reference libraries at Kostas lab.
The enveomics collection as a whole has very modest requirements, essentially a
*nix system with bash, perl, ruby, and R. Some scripts may require
additional libraries, or even external Software, but you'll be forewarned about
these requirements in the documentation accompanying each script. If you prefer,
you can also use the Graphical User Interface (GUI), that comes with additional
tests to let you know if your system is ready to use any given script.
The enveomics collection now has a graphical user interface! To learn more, please visit enveomics-gui.
The files in this repository are licensed under the terms of the Artistic License 2.0, except when otherwise noted.
You can find a copy of the license in LICENSE.txt or at https://www.perlfoundation.org/artistic_license_2_0.
Most scripts in this repository are self-documented. However, more extensive documentation (and some discussion) can be found at the documentation website. Additional documentation for recruitment plots can be found here.
If you use any of the utilitites in the Enveomics Collection in your research please cite:
Rodriguez-R LM & Konstantinidis KT (2016). The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes. PeerJ Preprints 4:e1900v1.