Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space
The Arioc software is documented in the user guide. Download the user guide directly (Arioc.guide.pdf) or as part of the current release (click here).
Wilton R, Budavari T, Langmead B, Wheelan SJ, Salzberg SL, Szalay AS. Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space. PeerJ. 2015, 3:e808. DOI:10.7717/peerj.808
Wilton R, Li X, Feinberg AP, Szalay AS. Arioc: GPU-accelerated alignment of short bisulfite-treated reads. Bioinformatics. 2018, 34:1-3. DOI:10.1093/bioinformatics/bty167