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Arioc v1.43
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@RWilton RWilton released this 01 Feb 20:15
· 39 commits to master since this release
v1.43
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Notes for Arioc v1.43:

The current build is v1.43.2994 (19 April 2021).

New features

  • AriocP: added Vtw configuration parameter to relax minimum alignment score constraint on pairs where one mate is "hard to align" (see User Guide)
  • AriocU, AriocP: added errorRate parameter for scaling MAPQ values (see User Guide)
  • AriocU, AriocP: refined MAPQ computation model to improve compatibility with GATK HaplotypeCaller
     
    For comparison, here are some results from hap.py for whole genome sequencing of HG002 (PrecisionFDA Truth Challenge v2, "difficult-to-map regions"), GATK HaplotypeCaller v4.2.0, GIAB benchmark VCF and truthset confident regions, hard-filtered on QUAL, INFO.QD, and INFO.MQ using thresholds computed with RTG vcfeval:
     
    hap.py results

Bug fixes

  • AriocP, AriocU: compile-time error with CUDA SDK v11.3.

Downloads

file content
Arioc.RQA.143.zip Linux examples
Arioc.w.143.zip Windows source code
Arioc.x.143.zip Linux source code
AriocSetup.msi Windows binaries and examples
Assets 6
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