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Blackbird #67
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Blackbird #67
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Fix for this JS error: `Uncaught ReferenceError: _i is not defined`
@iimog thanks for assembling this all together! |
Added a fix for bug #69 (hiding of wrong OTUs) |
The linear scale is actually implied by the comment. However a strange scale of exp(.4) has been applied.
Good afternoon @shujianbu, @hollybik, @nthitz Could you tell me more about the status of Phinch? Given that this repo has not been touched in 2+ years, should we continue to submit PRs to this repo, or continue development in another fork? Thanks for making this software! 🐦 🛫 |
@hollybik since this is an organisation, would it be possible to give someone else commit access so that we can maintain this repo? |
Hi @bgruening @colinbrislawn - the tentative plan is for Phinch to re-enter active development on July 1, 2017 (pending our funding renewal being approved through the Sloan foundation). Can you wait two months, or do we need to merge these commits now? We're going to come up with a better plan for community contributions and repo maintenance once we re-enter development - I agree this situation has not been ideal the past two years. Currently @nthitz has the primary repo oversight at Pitch Interactive, and I'm not sure what their capacity is to merge these pull requests. This repo feeds directly back to https://phinch.org, so any changes here will affect the live website (hence why only select people have commit access at the moment. |
This sounds very reasonable. I wish you good luck for funding, and I really appreciate your communication to this small developer community. Having a commercial sponsor leading development is very worthwhile. I'm willing to wait and see about funding, before we do independant development on a fork. |
This pull-request will add the following features from Blackbird (related to #63):
Further the pull requests by @bgruening and @blankenberg are included:
The pull request by @colinbrislawn will be obsolete:
All possibly conflicting changes (e.g. switch to SQLite) are not included in this pull request. Instead of Blackbird a preview version of Phinch after merging this pull request is running on https://blackbird.iimog.org. I will shut it down as soon as this pull request is merged.
To deploy the new version of Phinch on your server make sure that the python
biom
tool is installed. Otherwise upload of hdf5 files will result in an error. Please refer to these instructions: https://biom-format.org/#installing-the-biom-format-python-packageIf there are any further questions I'm happy to assist.